Harvard Researchers Map Over 70,000 Synaptic Connections Using Microhole Electrode Technology

by drbyos

Harvard Researchers Map Over 70,000 Synaptic Connections Using Advanced Silicon Chip

Harvard researchers have made a significant breakthrough in neuronal recording, mapping and cataloging more than 70,000 synaptic connections from about 2,000 rat neurons. This achievement is the result of a novel silicon chip capable of recording small but crucial synaptic signals from a large number of neurons simultaneously.

Advancing Neuronal Recording

The research, published in Nature Biomedical Engineering, represents a major leap forward in the field of neuronal recording. It brings scientists closer to creating a detailed synaptic connection map of the brain, which could unlock new insights into brain function.

Understanding Higher-Order Brain Functions

Scientists believe that complex brain functions arise from the intricate connections between brain cells, or neurons. These neuron-to-neuron contact points are known as synapses. By mapping these synaptic connections and determining their strengths, researchers can better understand how the brain processes information.

The Limitations of Current Methods

While electron microscopy has been used to create visual maps of synaptic connections, it cannot provide information about connection strengths, vital for understanding the functionality of neural networks. Another method, the patch-clamp electrode, allows high-sensitivity recording of synaptic signals from individual neurons. However, it has historically been impractical to use with a large number of neurons simultaneously.

The Microhole Electrode Array

A team led by Donhee Ham, a professor at Harvard’s John A. Paulson School of Engineering and Applied Sciences, developed a silicon chip with an array of 4,096 microhole electrodes. This innovative design enables massively parallel intracellular recording from rat neurons cultured on the chip. The researchers extracted over 70,000 synaptic connections from approximately 2,000 neurons.

Design and Operation of the Microhole Electrode Array

The microhole design is akin to the patch-clamp electrode, which consists of a glass pipette with a tiny hole to record intracellular signals. However, the new silicon chip can access many neurons in parallel, overcoming a significant limitation of previous methods.


Not only do microhole electrodes better couple to the interiors of neurons than vertical nanoneedle electrodes, but they are also much easier to fabricate. This accessibility is another important feature of our work.

According to postdoctoral researcher Jun Wang, the approach uses small current injections through the electrodes to gently open up cells, allowing for simultaneous access and recording.

The Role of Integrated Electronics

As co-lead author Woo-Bin Jung explained, the silicon chip also includes integrated electronics that provide precisely controlled currents to gain intracellular access and record signals simultaneously. This integration enhances the efficiency and accuracy of the recording process.

Data Analysis and Future Directions

One of the key challenges faced by the team was the analysis of the massive amounts of data generated by the recordings. However, they have developed methods to extract meaningful information about synaptic connections and their strengths. The researchers are now focusing on creating a version of the chip that can be used in live brains, an ambitious goal that could have far-reaching implications for neuroscience.

Conclusion

This groundbreaking study represents a significant step forward in our ability to map and understand the complex network of synaptic connections in the brain. By harnessing the power of advanced silicon chip technology, researchers are paving the way for new discoveries in brain function and disease.

As technology continues to evolve, this work could lead to the development of more accurate models of the brain, potentially improving our understanding of neurological conditions and informing the development of new treatments.

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Discover more about the research.

Journal references:

Wang, J., et al. (2025). Synaptic connectivity mapping among thousands of neurons via parallelized intracellular recording with a microhole electrode array. Nature Biomedical Engineering. doi.org/10.1038/s41551-025-01352-5

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